Install the new VPN by the end of 2025

Jupyter notebook

Updated

To use Jupyter notebooks, you should be on the Bigelow network (either on site or connected to the VPN)

  1. Start an interactive session/job
    qsub -I -q route -l walltime=8:00:00 -l ncpus=2,mem=16G -N jupyter-interactive
  2. Navigate to your notebook directory and setup your environment
    module load anaconda3
    unset XDG_RUNTIME_DIR
  3. Determine the IP address of the current compute node
    hostname -I
  4. Start a jupyter notebook session
    jupyter notebook --no-browser --port=<port> --ip=<ip address>
    The port can be in the range of 8888-8988. The ip address is the IP found in the previous step.
  5. Copy and paste the URL from your notebook session into a web browser on your local computer


Still need help? Submit a ticket.

Conda environments

Prokka

Powered by HelpDocs (opens in a new tab)